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J Gobeill ,
I Tbahriti , F Ehrler, A Mottaz, AL Veuthey, P Ruch. Gene Ontology density estimation and discourse
analysis for automatic GeneRiF extraction. BMC
Bioinformatics 2008 (to appear). [ pdf ] |
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P Ruch, A Geissbühler, J Gobeill, F Lisacek, I [ pdf ] |
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P Ruch, C Boyer, C Chichester, I Tbahriti,
A Geissbühler, P Fabry,
J Gobeill, V Pillet, D Rebholz-Schuhmann, C Lovis , AL
Veuthey. Using Argumentation to Extract Key Sentences
from Biomedical Abstracts, Int J Med Inform,
76(2-3): 195-200. 2007. |
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F.
Ehrler, J. Gobeill, I. Tbahriti, P. Ruch. GeneTeam Site Report for BioCreative II: Customizing a Simple Toolkit for Text
Mining in Molecular Biology. Proceedings of BioCreative
II. 2007. [ pdf ] |
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P Ruch, I Tbahriti, J Gobeill, AR. Aronson:
Argumentative Feedback: A Linguistically-Motivated Term Expansion for
Information Retrieval. ACL/COLING 2006. [ pdf ] |
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P. Ruch, J. Gobeill, [ pdf
] |
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P. Ruch,
J. Gobeill, I. Tbahriti, P. Tahintzi, P. Lovis, A. Geissbühler, F.
Borst. From clinical
narratives to ICD-Codes: automatic text categorization for medico-economic
encoding, SSIM 2007. [ pdf
] Try OPaC,
our CIM (Classification Internationale des Maladies
- 10) categorizer (in French), based on the Archimed
Datawarehouse framework: ! |
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Patrick
Ruch, Julien Gobeill, Imad Tbahriti, Robert Baud, Antoine Geissbühler. Automatic Assignment of SNOMED
Categories: Preliminary and Qualitative Evaluations. First Semantic-Mining
Conference on [ pdf ] Try SNOCat, our SNOMED Categorizer (restricted access) ! |
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Hersh
WR, Muller H, Jensen JR, Yang J, Gorman PN, Ruch P.
Advancing biomedical image retrieval: development and analysis of a test
collection. J Am Med Inform
Assoc. 2006 Sep-Oct;13(5):488-96. [ pdf ] |
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Imad Tbahriti, Anne-Lise Veuthey, Julien Gobeill, Patrick Ruch. Recherche d'information et analyse bibliographique appliquées à la mise à jour automatique de Swiss-Prot. CORIA 2007. [ pdf ] |
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Samir Abdou, Jacques Savoy, Patrick Ruch: Dépister efficacement de l'information dans une banque documentaire : L'exemple de MEDLINE. INFORSID 2006: 129-143 [ pdf ] Try EAGLi,
our MEDLINE search engine ! |
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P Ruch. Automatic Assignment of Biomedical Categories:
Toward a Generic Approach. Bioinformatics, 22(6):658-64, 2006. Try GOCat, our
Gene Ontology categorizer ! |
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Aronson
A, D Demner-Fushman D, Humphrey S, Lin J, Liu H, Ruch P, Ruiz M, Smith L, Tanabe L, Wilbur J, Fusion of
knowledge-intensive and statistical approaches for retrieving and annotating
textual genomics documents (2005) 15th Text Retrieval Conference (TREC),
National Institute of Standards and Technology. [ pdf ] Try EAGLi,
our MEDLINE search engine, based on the easyIR
toolkit customized for TREC Genomics ! |
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I Tbahriti,
C Try our argumentative categorizer ! |
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N Collier, A Nazarenko, R Baud and P Ruch. Recent advances in natural language processing for biomedical applications. Int J Med Inform. 75(6):413-7, 2006. |
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F Ehrler,
A Jimeno Yepes, A Geissbühler and P Ruch. Data-poor Categorization and
Passage Retrieval for Gene Ontology Annotation in Swiss-Prot, BMC
Bioinformatics, Special Issue on BioCreative: A Critical Assessment of
Text Mining Methods in Molecular Biology, vol. 6 (suppl. 1), 2005. Try GOCat,
our Gene Ontology categorizer, developed for the BioCreative I challenge ! |
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P Ruch, R
Baud, C Chichester, A Geissbühler, F Lisacek, J Marty, D
Rebholz-Schuhmann, I Tbahriti and AL Veuthey, Extracting key sentences with
latent argumentative structuring, MIE 2005, 2005. |
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P Ruch and L Perret and J |
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P Ruch, F Ehrler,
J Marty, C Chichester, G Cohen, P Fabry, H Müller, A Geissbühler.
Report on the TREC 2004
Experiment: Genomic Track, TREC
2004, 2005. |
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H Müller,
A Geissbühler and P Ruch. Report on the CLEF Experiment: Combining Image and Multi-lingual
Search for Medical Image Retrieval, CLEF 2004, LNCS vol. ?, 2004. Try BFMed, our French-to-English
Cross-Language MEDLINE search tool ! |
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I
Tbahriti, C |
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P Ruch.
Query Translation by Text Categorization, COLING 2004, 2004. [ pdf ] Try BFMed, our French-to-English
Cross-Language MEDLINE search tool ! |
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P Ruch, C
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P Ruch, R
Baud, and A Geissbühler. Learning-free Text Categorization, AIME
2003, LNCS/LNAI 2780, Dojat M; Keravnou E; Barahona P (Eds.). Try our Medical Subject Headings categorizer ! |
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P Ruch, R
Baud, and A Geissbühler. Using Lexical Disambiguation and Named-Entity
Recognition to Improve Spelling Correction in the Electronic Patient Record Art
Intell Med, Volume 29, Issues 1-2, September-October, Pages 169-184,
2003. |
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P Ruch, R
Baud, A Geissbuhler, M Hilario, and C Pellegrini. Information Retrieval and
Text Mining: An Inquiry into Automatic Spelling Correction. NLPBA 2002, 2002. |
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P Ruch.
Information Retrieval and Spelling Errors: Improving Effectiveness by Lexical
Disambiguation. ACM-SAC Information Access and Retrieval Track,
2002. |
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P Ruch.
Using Contextual Spelling Correction to Improve Retrieval Effectiveness in
Degraded Text Collections. COLING 2002, 2002. |
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P Ruch and R Baud. Evaluating and Reducing the Effect of
Data Corruption when Applying Bag of Words Approaches to Medical Records. Int
J Med Inf, 67 (1-3):75-83, 2002. |
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R Baud
and P Ruch. The Future of Natural Language Processing for Biomedical
Applications. Int J Med Inf, 67 (1-3):75-83, 2002. |
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P Ruch, R
Baud, A Geissbuhler, C Lovis, AM Rassinoux, and A Riviere. Using
part-of-speech and word-sense disambiguation for boosting string-edit
distance spelling correction. Lecture Notes in Artificial
Intelligence 2101, 2001. |
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P Ruch and A Gaudinat. Comparing Corpora and Lexical
Disambiguation. ACL Workshop on Comparing Corpora, ACL, 2001. |
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P Ruch, R
Baud, and A Geissbühler. Toward Filling The Gap between Interactive and
Fully-Automatic Spelling Correction using the Linguistic Context. In Proceedings
of the IEEE Workshop on Natural Language Processing and Knowledge Engineering
(NLPKE), 2001. |
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P Ruch, R
Baud, P Bouillon, and G Robert. Minimal Commitment and Full Lexical
Disambiguation: Balancing Rules and Hidden Markov Models. CoNLL-2000
(ACL-SIGNLL) Proceedings, pages 111-115, 2000. |
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P Ruch, R
Baud, R Rassinoux, P Bouillon, and G Robert. Looking back or looking all
around: comparing two spell checking strategies for documents edition in an
electronic patient record system. J Am Med Inform Assoc (Symposium Suppl),
pages 729-33, 2000. |
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P Ruch, R
Baud, AM Rassinoux, P Bouillon, and G Robert. Medical Document Anonymisation
with a Semantic Lexicon. J Am Med Inform Assoc (Symposium Suppl),
2000. |
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P
Bouillon, R Baud, G Robert, and P Ruch. Indexing by Statistical Tagging. Proc.
of JADT 2000, pages 35-42, 2000. |
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P Ruch, R
Baud, AM Rassinoux, P Bouillon, and G Robert. Tagging medical texts : a
rule-based experiment. Proceedings of MIE’2000 - IOS Press,
2000. |
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P Ruch, J
Wagner, P Bouillon, and R Baud. Tag-like Semantics for Medical Document
Indexing. J Am Med Inform Assoc (Symposium Suppl), pages 137-141,
1999. |
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P Ruch, R Baud, A Geissbuhler,
and AM Rassinoux. Comparing general and medical
texts for information retrieval based on natural language processing: an
inquiry into lexical disambiguation. Proceedings of Medinfo'2001,
pages 261-5, 1999. |
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P Ruch
and C Schmidt. Evolution
of Man’s Needs and Technological Progression: Pragmatic foundations for
a relational coupling. Humane Interfaces : Question of Methods and
Practice in Cognitive Technology, 51, 1998. |
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P Ruch.
Mapping table FIPSTAG/GRACE. Technical report, Université de
Genève, 1996. |
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P Ruch. Applying
Natural Language Processing to Information Retrieval in Clinical Records and
Biomedical Texts. Ph. D. March 2002 - University of Geneva. |